Missing process or function with name 'getFileSystem'

[arpit20328]

Missing process or function with name 'getFileSystem'

[mberacochea]

Hi @arpit20328

Could you elaborate a bit on the error please? Where are you trying to run the pipeline? Which Nextflow version? Which flags are you using for the pipeline?.

Cheers

[arpit20328]

@mberacochea I ran the following command :

nextflow run virify.nf --illumina *R1.fastq.gz --output /home/arpit/same_Karishma_data_for_virify/ -profile local,docker --viphog true

Nextflow-version: 21.10.6

[mberacochea]

Hey, alright. 21.10.6 is a fairly old version of Nextflow, can you try running the pipeline with a new one?

Also, can you share the nextflow.log file please?