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add functions to extract reference sequences from reference dbs #11

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jvollme opened this issue Dec 3, 2021 · 2 comments
Open
1 of 3 tasks

add functions to extract reference sequences from reference dbs #11

jvollme opened this issue Dec 3, 2021 · 2 comments
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@jvollme
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enhancement New feature or request
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Improvements A

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jvollme commented Dec 3, 2021 •
edited

  • add function to extract nucleotide references from blast-dbs
  • add function to extract protein references from diamond dbs use blast-DBs for diamond also
  • add wrapper function to getdb-db-object that chooses the correct db based on configs
@jvollme jvollme added the enhancement New feature or request label Dec 3, 2021
@jvollme jvollme added this to the Improvements A milestone Dec 3, 2021
@jvollme jvollme self-assigned this Dec 3, 2021
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jvollme commented Dec 3, 2021

this will be also handled in branch "iss9"

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jvollme commented Mar 17, 2022

this can be simplified, since diamond now also accepts blast-databases.
Just base everything on blast-databases and use the corresponding blastdbcmd function

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