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@TARGENE

TarGene

Targeted Estimation of Genetic Effects

TarGene

Your one-way ticket to Targeted-Learning of genetic effects! ✈️

Pipeline

TarGene is a Nextflow pipeline for the estimation of genetic effects using the Targeted Learning framework.

Linked repositories

Repository Description Dev Build Status Code Coverage Current Release
targene-pipeline TarGene Pipeline GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
TMLE.jl TMLE package GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
TMLECLI.jl TMLE CLI GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
TargeneCore.jl Core functionalities used by the pipeline GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
UKBMain.jl Traits extraction from the UK-Biobank GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)
Simulations.jl Evaluation of Semi-Parametric Estimators GitHub Workflow Status (with branch) Codecov branch GitHub release (latest SemVer)

Popular repositories Loading

  1. TMLE.jl TMLE.jl Public

    A Julia implementation of the Targeted Minimum Loss-based Estimation

    Julia 19 4

  2. targene-pipeline targene-pipeline Public

    Nextflow pipeline for Targeted-Learning of genetic effects

    Nextflow 11

  3. TargeneCore.jl TargeneCore.jl Public

    Core Functionalities for TarGene

    Julia 2 2

  4. TMLECLI.jl TMLECLI.jl Public

    Julia 2

  5. UKBMain.jl UKBMain.jl Public

    To work with a UKB main dataset

    Julia 1

  6. .github .github Public

Repositories

Showing 10 of 11 repositories
  • TargeneCore.jl Public

    Core Functionalities for TarGene

    Julia 2 Apache-2.0 2 4 2 Updated Mar 30, 2025
  • TMLE.jl Public

    A Julia implementation of the Targeted Minimum Loss-based Estimation

    Julia 19 MIT 4 20 1 Updated Mar 22, 2025
  • targene-pipeline Public

    Nextflow pipeline for Targeted-Learning of genetic effects

    Nextflow 11 MIT 0 3 1 Updated Mar 17, 2025
  • Nextflow 0 0 0 0 Updated Mar 13, 2025
  • TMLECLI.jl Public
    Julia 2 MIT 0 2 0 Updated Sep 6, 2024
  • UKBMain.jl Public

    To work with a UKB main dataset

    Julia 1 MIT 0 1 0 Updated Sep 6, 2024
  • Julia 0 MIT 0 0 0 Updated Aug 29, 2024
  • TarViz Public

    Visualization dashboard for TarGene results

    Python 0 MIT 0 1 0 Updated Aug 29, 2024
  • .github Public
    0 0 0 0 Updated Aug 28, 2024
  • TarGeneUtils.jl Public

    Functions used throughout TarGene

    0 MIT 0 0 0 Updated May 20, 2024

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