Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps

GPU-accelerated template matching for cryo-ET

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

Foldseek enables fast and sensitive comparisons of large structure sets.

Read and write TIFF files.

a tool for using surfaces to explore volumetric data in napari

Deconvolution of widefield microscopy images and generation of point spread functions

Multi-class signal peptide prediction and structure decoding model.

Image restoration for fluorescence microscopy

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

StarDist - Object Detection with Star-convex Shapes

Scripts to make cryo-electron tomography a bit easier

Neural networks for cryo-EM reconstruction

Miscellaneous scripts for processing cryo-ET data

Making Protein folding accessible to all!

Automatic atomic model building program for cryo-EM maps

A "batteries-included" distribution of ImageJ 🔋

A GitHub Action for Ruff

Python programs for electron microscopy

Mean curvature motion for cryo-electron tomograms

membrane segmentation in 3D for cryo-ET

Integrate Keeweb into Nextcloud

cryo-ET particle picking by representation and metric learning

ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

Parallel cryo electron tomography via beam image shift

STOPGAP is a MATLAB-based package for subtomogram averaging.

Self-supervised learning for isotropic cryoET reconstruction