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@fmi-faim

FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

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  1. fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    Java 7 3

  2. visiview-scripts Public

    A collection of macros for the VisiView acquisition software

    Python 1 1

  3. imagej-scripts Public

    Python 1

Repositories

Showing 10 of 57 repositories
  • pytorch-rdc-net Public
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Mar 25, 2025
  • napari-save-transformed Public

    Save image layers with their transformation applied

    Python 2 BSD-3-Clause 0 2 0 Updated Mar 25, 2025
  • faim-ipa Public

    A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

    Python 11 BSD-3-Clause 6 18 1 Updated Mar 24, 2025
  • ipa-project-template Public

    Copier template for image processing & analysis projects.

    Jinja 5 MIT 3 5 (1 issue needs help) 0 Updated Mar 16, 2025
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    Python 0 BSD-3-Clause 5,206 0 0 Updated Mar 5, 2025
  • faim-wako-searchfirst Public

    Python scripts for the SearchFirst option in Wako Software Suite

    Python 1 MIT 1 8 4 Updated Mar 3, 2025
  • example-project Public
    Jupyter Notebook 2 BSD-3-Clause 0 0 1 Updated Mar 3, 2025
  • cellvoyager-types Public

    Pydantic models for CellVoyager CV7000/CV8000 metadata

    Python 0 BSD-3-Clause 0 0 0 Updated Mar 3, 2025
  • metamorph-mda-parser Public

    Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

    Python 0 BSD-3-Clause 0 2 0 Updated Mar 1, 2025
  • bioio-lif Public Forked from bioio-devs/bioio-lif

    A BioIO reader plugin for reading LIF (Leica Image File) images.

    Python 0 GPL-3.0 1 0 0 Updated Feb 28, 2025
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