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@ismms-himc

Human Immune Monitoring Center at Mount Sinai

Human Immune Monitoring Center at the Icahn School of Medicine at Mount Sinai.

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  1. clustergrammer2 Public

    "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.

    HTML 114 20

  2. clustergrammer2-notebooks Public

    Examples using Clustergrammer2 to explore high-dimensional datasets.

    Jupyter Notebook 40 11

  3. visium-clustergrammer2 Public

    Spatial Transcriptomics Dashboard

    Jupyter Notebook 28 5

  4. clustergrammer-gl Public

    WebGL Clustergrammer JavaScript Library

    JavaScript 22 18

  5. covid-19_sinai_reviews Public

    Jupyter Notebook 8 7

  6. cytutils Public

    Cytometry quality control and reproducibility utilities

    R 8 7

Repositories

Showing 10 of 50 repositories
  • visium_analysis Public
    Python 0 MIT 0 0 0 Updated Sep 19, 2024
  • LuminexTools Public

    Luminex related processing pipeline

    R 0 0 0 0 Updated Jun 28, 2024
  • OlinkApp Public
    R 0 0 0 0 Updated Jun 17, 2024
  • visium_segmentation Public
    Python 0 0 0 0 Updated Feb 22, 2024
  • visium_deconvolution Public
    Batchfile 0 0 0 0 Updated Feb 22, 2024
  • clustergrammer-gl Public

    WebGL Clustergrammer JavaScript Library

    JavaScript 22 MIT 18 26 (4 issues need help) 14 Updated Aug 21, 2023
  • visium-clustergrammer2 Public

    Spatial Transcriptomics Dashboard

    Jupyter Notebook 28 BSD-3-Clause 5 11 1 Updated Jul 6, 2023
  • codex_dashboard Public

    Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data

    Jupyter Notebook 16 BSD-3-Clause 4 5 1 Updated Jul 6, 2023
  • himc_dockers Public

    Docker builds for all tools used by HIMC

    Dockerfile 0 0 0 0 Updated Mar 17, 2023
  • clustergrammer-widget2-deprecated Public
    Python 0 BSD-3-Clause 0 0 25 Updated Jan 4, 2023
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