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  1. copykat copykat Public

    R 231 54

  2. CellTrek CellTrek Public

    R 118 20

  3. HumanBreastCellAtlas HumanBreastCellAtlas Public

    Repository for codes for the HBCA paper

    R 36 10

  4. copykit copykit Public

    Toolkit for single-cell copy number analysis

    R 21 4

  5. ACT_paper ACT_paper Public

    Scripts used for the ACT paper

    HTML 12 4

  6. scopit scopit Public

    R 5 2

Repositories

Showing 10 of 28 repositories
  • CSHL_workshops Public
    3 3 0 0 Updated Apr 28, 2025
  • intro_bioinfo_course Public

    introduction to bioinformatics workshop

    HTML 0 0 0 0 Updated Apr 14, 2025
  • PRECISE_paper Public

    code for generating the figures for the PRECISE trial paper

    R 1 MIT 0 0 0 Updated Apr 8, 2025
  • normalbreastDNA Public
    R 4 1 1 0 Updated Feb 17, 2025
  • GCC_python_workshop Public

    Repository for introduction to RNA seq analysis in python. Workshop hosted by the GCC and led by Reem Elgaish and Ryan Mulqueen.

    Jupyter Notebook 1 1 0 1 Updated Feb 10, 2025
  • navinlabcode.github.io Public
    HTML 0 Apache-2.0 0 0 0 Updated Jan 17, 2025
  • copykit Public

    Toolkit for single-cell copy number analysis

    R 21 4 3 (1 issue needs help) 0 Updated Oct 15, 2024
  • pan_cancer_paper Public

    Pan-cancer CNA paper

    R 0 0 0 0 Updated Sep 30, 2024
  • tnbc-chemo Public

    Decoding the Archetypes and Ecotypes of Triple-Negative Breast Cancer in Response to Chemotherapy

    R 1 0 0 0 Updated Aug 28, 2024
  • wellDA-seq Public

    Single cell genome and epigenome co-profiling reveals hardwiring and plasticity in breast cancer

    R 0 0 0 0 Updated Aug 5, 2024
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