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@nf-cmgg

Center For Medical Genetics Ghent - Nextflow workflows

Center For Medical Genetics Ghent - Ghent University Hospital - Nextflow workflows

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  1. structural Public

    A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

    Nextflow 20 2

  2. smallvariants Public

    A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

    Nextflow 8 1

  3. preprocessing Public

    Preprocessing workflow for sequencing data at CMGG

    Nextflow 3 2

Repositories

Showing 10 of 11 repositories
  • smallvariants Public

    A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

    Nextflow 8 MIT 1 12 4 Updated Apr 24, 2025
  • report Public

    A post-processing reporting pipeline for internal use at CMGG

    Nextflow 0 MIT 1 0 1 Updated Apr 22, 2025
  • test-datasets Public

    Test datasets for unit tests with the nf-cmgg pipelines

    0 MIT 1 0 0 Updated Mar 19, 2025
  • structural Public

    A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

    Nextflow 20 MIT 2 14 0 Updated Feb 21, 2025
  • preprocessing Public

    Preprocessing workflow for sequencing data at CMGG

    Nextflow 3 MIT 2 4 0 Updated Feb 11, 2025
  • sampletracking Public

    CMGG Sampletracking workflow

    Nextflow 0 MIT 0 7 0 Updated Jan 30, 2025
  • exomecnv Public

    A nextflow pipeline for calling exome CNVs

    Nextflow 9 MIT 2 4 1 Updated Jan 23, 2025
  • configs Public

    Nextflow config files

    0 MIT 1 0 0 Updated Jan 16, 2025
  • wisecondorx Public

    A nextflow pipeline for creating references for WisecondorX

    Nextflow 0 MIT 1 0 0 Updated Apr 24, 2024
  • nextflow-beginner-feb-2024 Public

    The repository used at the Beginner Nextflow course in february 2024

    Nextflow 5 MIT 1 0 0 Updated Feb 7, 2024
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