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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 242 repositories
  • methylDackel Public
    WDL 0 0 0 1 Updated Mar 26, 2025
  • neoantigenPrediction Public
    WDL 0 0 0 0 Updated Mar 25, 2025
  • pinery-reports Public

    Reports based on data from Pinery

    Java 0 LGPL-3.0 1 0 1 Updated Mar 25, 2025
  • Analysis_Reports Public

    for generation of analysis reports to accompany released data

    Python 0 0 0 0 Updated Mar 24, 2025
  • data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python 0 MIT 0 0 0 Updated Mar 24, 2025
  • shesmu Public

    Decision-driven action launching system

    Java 8 MIT 4 0 1 Updated Mar 24, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 GPL-3.0 6 6 5 Updated Mar 24, 2025
  • sequenza Public

    Workflow for Sequenza, cellularity and ploidy

    R 19 2 2 2 Updated Mar 24, 2025
  • mavis Public

    MAVIS workflow, annotation of structural variants

    WDL 0 1 0 1 Updated Mar 24, 2025
  • mutect2 Public

    Workflow to run Mutect2 (GATK4)

    WDL 2 2 0 2 Updated Mar 24, 2025
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