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OSError between tissue_positions_list.csv and tissue_positions.csv
Bug 🐛
Triage 🩺
This issue needs to be triaged by a maintainer
#3085
opened Jun 1, 2024 by
alexanderchang1
2 of 3 tasks
Pre-release jobs fail because scipy removed
.A
from csr/csc matrices
Bug 🐛
#3083
opened May 31, 2024 by
flying-sheep
2 of 3 tasks
Dotplot / Matrixplot Bug/Suggestion [Key Error] Because "var_group_labels" & "categories_order" using the same variable (memory), mostly happened when "swap_axes=True"
Bug 🐛
Triage 🩺
This issue needs to be triaged by a maintainer
#3081
opened May 31, 2024 by
WhatMelonGua
3 tasks done
I have always had a question: do I need to scale my adata before running sc.tl.score_genes?
Bug 🐛
Triage 🩺
This issue needs to be triaged by a maintainer
#3080
opened May 30, 2024 by
christophechu
3 tasks done
Only show the genes that have significant statistics
Enhancement ✨
Triage 🩺
This issue needs to be triaged by a maintainer
#3077
opened May 27, 2024 by
ngvananh2508
AttributeError: 'Ingest' object has no attribute '_pca_use_hvg'
Bug 🐛
Triage 🩺
This issue needs to be triaged by a maintainer
Adata.raw gets modified upon log normalization of adata
Bug 🐛
Triage 🩺
This issue needs to be triaged by a maintainer
#3073
opened May 22, 2024 by
AlejandraRodelaRo
2 of 3 tasks
Error in running scrublet
Bug 🐛
Triage 🩺
This issue needs to be triaged by a maintainer
#3070
opened May 20, 2024 by
dicklim
2 of 3 tasks
Broken Scrublet Test
Bug 🐛
Triage 🩺
This issue needs to be triaged by a maintainer
#3068
opened May 17, 2024 by
ilan-gold
3 tasks done
sc.get.aggregate summary statistics
Enhancement ✨
Triage 🩺
This issue needs to be triaged by a maintainer
#3063
opened May 16, 2024 by
grst
Wrongly ordered DotPlot totals in
scanpy
1.10.1 with Pandas 1.x
Area - Plotting 🌺
Bug 🐛
#3062
opened May 16, 2024 by
rgoya
2 of 3 tasks
Access to Diffusion Map methods (and other embedding methods) as Scikit-Learn style API
Area – API
API design
Enhancement ✨
Needs info❔
More information needed
#3054
opened May 14, 2024 by
jolespin
More complete dataset documentation
Area - Documentation 📒
Enhancement ✨
#3051
opened May 13, 2024 by
flying-sheep
Loophole with using scaled adata for sc.tl.score_genes_cell_cycle
#3030
opened Apr 26, 2024 by
kaushik-roy-physics
Unexplainable sc.pp.highly_variable_genes(subset = True) behavior
Bug 🐛
#3027
opened Apr 24, 2024 by
jberkh
3 tasks done
sc.pl.paga_path error in dimensions of array passed to ax.imshow
Bug 🐛
#3025
opened Apr 23, 2024 by
AlePur
2 of 3 tasks
Different clustering results when setting metrics = "cosine", using callable cosine function and direct cos distance input.
Bug 🐛
#3021
opened Apr 22, 2024 by
zby3
2 of 3 tasks
sc.pp.neighbors(..., knn=True, n_neighbors=k) does not threshold the adjacency
Bug 🐛
#3014
opened Apr 18, 2024 by
mkarikom
3 tasks done
Pass n_iterations argument to scanpy.tl.louvain
Enhancement ✨
#3007
opened Apr 15, 2024 by
AlSzmigiel
Failed violins
Bug 🐛
Needs info❔
More information needed
#3005
opened Apr 12, 2024 by
apodtele
2 of 3 tasks
Performance: Investigate
pp.scale
with sparse matrices
Area – Performance 🐌
Enhancement ✨
#2986
opened Apr 8, 2024 by
Intron7
Suggestion to support VisiumHD tissue_position_list files (using parquet files)
Enhancement ✨
#2982
opened Apr 7, 2024 by
Rafael-Silva-Oliveira
add support for Visium HD Spatial Gene Expression data
Enhancement ✨
#2973
opened Apr 2, 2024 by
111-dep
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Updated in the last three days: updated:>2024-05-29.