nextflow
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Nextflow wrapper for fastqc
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Sep 11, 2020 - Nextflow
A Custom Variant Calling Pipeline for Dengue WGS (BWA + GATK + Lofreq) using nextflow and docker
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Dec 9, 2017
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
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Aug 4, 2018 - HTML
A directory structure to build a workspace for experiments.
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Mar 23, 2022
Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
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Jan 12, 2022 - HTML
Nextflow Scripts/Workflows for Bioinformatics
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Mar 10, 2023 - Nextflow
Variant calling nextflow pipeline for Grapedia " Tinkering with GRAPEDIA Training School: a modern take on grapevine data analysis" (DATE: 26-28 June 2023 VENUE: FEM | Fondazione Edmund Mach, Via E. Mach 1, 38098 San Michele all’Adige, Trento, Italy)
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Jun 20, 2023 - Nextflow
Nextflow resequencing pipeline with bwa-mem and freebayes
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Apr 11, 2024 - Nextflow
Simple Nextflow RNA-Seq pipeline
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Jan 24, 2024 - Nextflow
Primary is a pipeline dedicated for all sequences to be processed for primary analysis.
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May 29, 2024 - Nextflow
Nextflow + Singularity environments containerized
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Aug 2, 2018 - Dockerfile
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