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@uhlmanngroup

Uhlmann Group @ EMBL-EBI

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  1. splinedist splinedist Public

    SplineDist: Automated Cell Segmentation with Spline Curves

    Jupyter Notebook 67 15

  2. muMatch muMatch Public

    Pipeline for putting surface meshes into correspondence

    Python 26 5

  3. pyshot pyshot Public

    A Python API for the SHOT descriptor

    C++ 23 8

  4. shapeanalysis101 shapeanalysis101 Public

    A tutorial of classical shape analysis methods

    Jupyter Notebook 11 2

  5. AURA-Net AURA-Net Public

    Jupyter Notebook 5 1

  6. napari-splineit napari-splineit Public

    Util to visualize and manipulate spline curves in Napari

    Python 5 1

Repositories

Showing 10 of 22 repositories
  • MorphoDynamicsPipe Public

    A library that uses snakemake to run a morphodynamics analysis on images of cells or nuclei..

    Python 2 GPL-2.0 0 0 0 Updated Mar 20, 2025
  • bioimage_embed Public
    Python 3 3 9 5 Updated Oct 21, 2024
  • shape_embed Public Forked from uhlmanngroup/bioimage_embed
    Python 0 3 0 1 Updated Oct 2, 2024
  • splinedist Public

    SplineDist: Automated Cell Segmentation with Spline Curves

    Jupyter Notebook 67 BSD-3-Clause 15 4 2 Updated Sep 29, 2024
  • imagequantification101 Public
    Jupyter Notebook 3 BSD-3-Clause 1 0 0 Updated Jun 25, 2024
  • soft-target-InfoNCE Public

    Noise contrastive estimation with soft targets for conditional models

    Python 0 0 0 0 Updated Jun 24, 2024
  • shapeanalysis101 Public

    A tutorial of classical shape analysis methods

    Jupyter Notebook 11 BSD-3-Clause 2 5 1 Updated Nov 25, 2023
  • cir4mics Public

    Simulating structurally variable Nuclear Pore Complexes for Microscopy

    Jupyter Notebook 2 MIT 0 1 0 Updated Sep 8, 2023
  • nuclear_phenotyping Public
    Python 2 1 1 2 Updated Jun 26, 2023
  • ZeroCostDL4Mic Public Forked from HenriquesLab/ZeroCostDL4Mic

    ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

    Jupyter Notebook 0 MIT 136 0 0 Updated Jun 6, 2023
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