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@BilkentCompGen

Alkan Lab for Bioinformatics and Computational Genomics

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  1. tardis tardis Public

    Toolkit for automated and rapid discovery of structural variants

    C 22 6

  2. hercules hercules Public

    Profile HMM-based hybrid error correction algorithm for long reads

    C++ 20 4

  3. mrfast mrfast Public

    micro-read Fast Alignment Search Tool

    C 19 4

  4. GateKeeper GateKeeper Public

    GateKeeper: Fast Alignment Filter for DNA Short Read Mapping

    VHDL 18 9

  5. valor valor Public

    variation discovery using long range information in linked-reads

    C 15 2

  6. mrcanavar mrcanavar Public

    micro-read Copy Number Variant Regions finder

    C 10 2

Repositories

Showing 10 of 23 repositories
  • bioinformatics-algorithms Public

    CS481/583 Course Web Page

    CSS 3 BSD-2-Clause 0 0 0 Updated Mar 22, 2025
  • lcptools Public

    Implementation of LCP in C

    C++ 0 BSD-3-Clause 0 0 0 Updated Mar 18, 2025
  • BilkentCompGen.github.io Public

    Alkan Lab website

    SCSS 3 7 0 0 Updated Mar 5, 2025
  • lcpan Public

    Variation Graph Construction using Locally Consistent Parsing

    C 1 BSD-3-Clause 0 0 0 Updated Feb 13, 2025
  • gencore Public

    GenCore utilizes the innovative Locally Consistent Parsing (LCP) algorithm for precise genomic comparisons, supporting .fastq and .fasta files. Implemented in C for high performance on large datasets

    C 0 BSD-3-Clause 0 0 0 Updated Feb 10, 2025
  • GateKeeper-GPU Public

    Pre-Alignment Filtering for Short Read Mapping in GPU

    C 3 1 0 0 Updated Jun 27, 2024
  • saber Public

    Pattern matching tool to detect block rearrangement events in genomic sequences

    C++ 1 0 0 0 Updated Feb 14, 2024
  • Linden Public
    C++ 0 1 0 0 Updated Oct 15, 2023
  • tardis Public

    Toolkit for automated and rapid discovery of structural variants

    C 22 BSD-2-Clause 6 3 0 Updated Aug 24, 2023
  • brifin Public
    Python 1 BSD-2-Clause 0 0 0 Updated Jan 2, 2023
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