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@ChaissonLab

ChaissonLab

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  1. LRA LRA Public

    Long read aligner

    C++ 115 8

  2. vamos vamos Public

    VNTR annotation using motif selection

    C 32 6

  3. danbing-tk danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    C++ 24 4

  4. TT-Mars TT-Mars Public

    Structural Variants Assessment Based on Haplotype-resolved Assemblies

    Python 21 4

  5. hmcnc hmcnc Public

    Forked from redndgreen8/hmcnc

    Hidden Markov Model based Copy number caller

    C++ 20

  6. SegDupAnnotation SegDupAnnotation Public

    Python 9 2

Repositories

Showing 10 of 26 repositories
  • danbing-tk Public

    Toolkit for VNTR genotyping and repeat-pan genome graph construction

    C++ 24 BSD-3-Clause 4 6 1 Updated Mar 30, 2025
  • vamos Public

    VNTR annotation using motif selection

    C 32 GPL-2.0 6 9 1 Updated Mar 20, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 0 MIT 3,447 0 0 Updated Feb 18, 2025
  • Ctyper Public Forked from Walfred-MA/Ctyper

    Genotyping of paralog specific gene types

    C++ 4 MIT 1 0 0 Updated Feb 17, 2025
  • rare-var-scratch Public
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Jan 14, 2025
  • SegDupAnnotation2 Public

    Count gene duplications.

    Python 2 1 0 0 Updated Jan 8, 2025
  • L1Scan Public

    Scan a bam file for l1 insertions.

    C++ 0 0 0 0 Updated Dec 17, 2024
  • chaissonlab.github.io Public
    JavaScript 0 MIT 0 0 0 Updated Dec 12, 2024
  • hmcnc Public Forked from redndgreen8/hmcnc

    Hidden Markov Model based Copy number caller

    C++ 20 1 0 0 Updated Oct 23, 2024
  • CARD-VNTR Public

    Tandem repeat analysis for the CARD consortium

    WDL 1 1 0 1 Updated Oct 10, 2024
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