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Lists (32)
Biological model
8 repositories
Community
Community, group and Orgnization.9 repositories
Computational Biology
8 repositories
CRAN
227 repositories
CV
10 repositories
Data Science
163 repositories
Evolution
39 repositories
Feature Engineering
Feature Engineering, data preprocessing, embedding and clustering.63 repositories
Gene Ontology
31 repositories
Generalization
Model generalization, out-of-distribution, domain adaption, domain generalization113 repositories
Genome
33 repositories
Graph
Just for math!13 repositories
Interactome
Algorithms and tools for molecular interactions63 repositories
Loss_optimizer
Loss function, optimizer, model training tricks and model metrics and so on.40 repositories
Math
16 repositories
ML
Machine learning ensembles from CS!99 repositories
multimodal
multimodal NN framework10 repositories
Network
Tools for biological network!109 repositories
NGS
130 repositories
NLP
115 repositories
Proteomics
30 repositories
Resources
2 repositories
scRNA-seq
231 repositories
Sequence Analysis
Algorithms for analyzing the biological sequences, such as alignment, statistics and so on.31 repositories
SSL
positive-unlabeled learning, semi-supervised learning, self-supervised learning37 repositories
Statistics Bin
Trash bin for statistical repo.16 repositories
Structurome
43 repositories
TMP
Temporary!22 repositories
Tool
Tools and ML models for bioinformatics!99 repositories
Transcriptome
23 repositories
Translatome
8 repositories
Visualization
Interactive web-based approach, visulization, plot.11 repositories
Starred repositories
Code repository for the SPOC tool for scoring binary AF-M predicitons.
QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.
Computational Framework Separating Single-Cell RNA-Seq by Genetic and Contextual Information
Code associated with "ORC-Omics (ORCO): Ollivier-Ricci curvature for unsupervised omic network analysis"
Method to find contrastive dimensions between experimental conditions
Latent Batch Effect Correction of Omics data by Nearest-Pair Matching
Genome modeling and design across all domains of life
Implementation of the proposed DeepCrossAttention by Heddes et al at Google research, in Pytorch
Implementation of the sparse attention pattern proposed by the Deepseek team in their "Native Sparse Attention" paper
A Python Package for Convex Regression and Frontier Estimation
Interpretability methods to analyze the behavior and individual predictions of modern neural networks in R.
R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and ML models. Conduct linear and non-lin…
A tidy structure for spatio-temporal vector data
Integrate Any Omics: Towards genome-wide data integration for patient stratification
RNA-seq prediction with deep convolutional neural networks.
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
Implementation of the proposed minGRU in Pytorch