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Covert Lab

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  1. WholeCellEcoliRelease Public

    Release of the whole cell E. coli model.

    Python 64 15

Repositories

Showing 10 of 31 repositories
  • wcEcoli Public

    Whole Cell Model of E. coli

    Python 21 5 150 2 Updated Mar 25, 2025
  • vEcoli Public

    Whole cell model of E. coli implemented with Vivarium

    Jupyter Notebook 13 MIT 5 6 2 Updated Mar 21, 2025
  • BIOE101-Online-Companion Public

    This repository is an online companion to BIOE101/210: Systems Biology, providing code and resources to support the textbook.

    Jupyter Notebook 0 0 0 0 Updated Feb 10, 2025
  • arrow Public

    Stochastic simulations in python

    Python 3 MIT 1 17 1 Updated Dec 12, 2024
  • WholeCellEcoliRelease Public

    Release of the whole cell E. coli model.

    Python 64 15 1 6 Updated Dec 10, 2024
  • orjson Public Forked from ijl/orjson

    Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy

    Python 0 Apache-2.0 243 0 0 Updated Jul 3, 2024
  • short-gene-alignment Public
    Python 0 0 0 0 Updated Feb 28, 2024
  • Rend-seq-plots Public
    Jupyter Notebook 0 1 0 0 Updated Feb 28, 2024
  • borealis Public

    Run FireWorks workflows in Google Cloud.

    Python 4 MIT 1 1 3 Updated Jun 6, 2023
  • wcecoli-colony-analysis Public

    Code and analysis for the "Whole-Colony Modeling of Escherichia coli" that is currently in preparation.

    Python 0 GPL-3.0 0 0 0 Updated Aug 23, 2022
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