Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Updates/cleanup #34

Open
wants to merge 5 commits into
base: main
Choose a base branch
from
Open

Updates/cleanup #34

wants to merge 5 commits into from

Conversation

veidenberg
Copy link
Contributor

@veidenberg veidenberg commented Feb 11, 2025

Description

Update the track loader script and do some cleanup.

Track loader:

  • integrate utility script to fetch track descritions from database on runtime
  • add --release and --env command-line params
  • refactoring, remove obsolete code and params

Maintenance:

  • remove olds scripts and csv files, simplify script names
  • update readmes, srcipt help text, comments, track loading SOP
  • add python requirements for utility scripts

Knowledge Base

SOP for track loading: https://www.ebi.ac.uk/panda/jira/browse/ENSWEBSOPS-171

Example(s)

./submit_tracks.py --release 5 --env dev #load all tracks for beta-5 release to dev Track API

@veidenberg veidenberg marked this pull request as ready for review March 13, 2025 12:10
@@ -272,29 +313,29 @@ def apply_template(genome_id: str, template_name: str, datafile: str = "") -> No
track_data["datafiles"][key] = f"{nameroot}-summary.bw"

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

zoom out - zoom in.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants