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@HKU-BAL

HKUCS Bioinformatics Algorithms and Core Technology Research Laboratory

Research group led by Ruibang Luo in Computer Science, The University of Hong Kong

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  1. Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    Python 268 31

  2. ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    Python 81 8

  3. ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    Python 59 4

Repositories

Showing 10 of 32 repositories
  • ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    Python 59 BSD-3-Clause 4 1 0 Updated Mar 19, 2025
  • Clair3-RNA Public

    Clair3-RNA - a long-read small variant caller for RNA sequencing data

    Python 22 BSD-3-Clause 1 3 0 Updated Mar 18, 2025
  • Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    Python 268 31 13 0 Updated Feb 28, 2025
  • ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    Python 81 BSD-3-Clause 8 1 0 Updated Feb 27, 2025
  • ClusterV Public

    ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

    Python 11 BSD-3-Clause 0 1 0 Updated Jan 7, 2025
  • TC-RENO Public

    A tool to detect full length isoforms of RNA

    Python 3 3 0 0 Updated Dec 14, 2024
  • AutoPM3 Public
    Python 2 MIT 0 0 0 Updated Nov 4, 2024
  • Clair3-Nova Public

    de novo variant calling in trio using Nanopore long-reads

    Python 9 BSD-3-Clause 0 0 0 Updated Nov 1, 2024
  • msdb-flask Public

    Mirtronstructdb: A comprehensive database of mirtrons with predicted secondary structures

    HTML 1 MIT 1 0 0 Updated Jul 28, 2024
  • Governome Public

    Governome - Towards a new standard in genomic data privacy: a realization of owner-governance

    Go 3 BSD-3-Clause 0 0 0 Updated Jul 21, 2024
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