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@PGScatalog

The Polygenic Score (PGS) Catalog

Code repository for the Polygenic Score (PGS) Catalog, an open database of PGS and the relevant metadata needed to apply and evaluate them correctly

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  1. pgsc_calc Public

    The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

    Nextflow 127 25

  2. pygscatalog Public

    Python applications and libraries for working with PGS data and the PGS Catalog

    Python 7 3

  3. PGS_Catalog Public

    An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

    Python 10 5

  4. pgs-harmonizer Public

    A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

    Python 4 2

Repositories

Showing 10 of 11 repositories
  • PGS_Catalog Public

    An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

    Python 10 Apache-2.0 5 25 6 Updated Mar 13, 2025
  • pygscatalog Public

    Python applications and libraries for working with PGS data and the PGS Catalog

    Python 7 Apache-2.0 3 7 5 Updated Mar 12, 2025
  • pgsc_calc Public

    The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

    Nextflow 127 Apache-2.0 25 18 1 Updated Mar 11, 2025
  • pgs_template_validator Public

    Standalone Python validator for the PGS Catalog Curation Template (Metadata)

    Python 0 Apache-2.0 2 0 1 Updated Dec 4, 2024
  • ebi-2024-pgsc_calc-webinar Public Forked from EBISPOT/eshg-2024-workshop

    Workshop material for the EBI Training webinar about pgsc_calc.

    HTML 0 CC-BY-4.0 1 0 0 Updated Dec 2, 2024
  • pgs-harmonizer Public

    A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

    Python 4 Apache-2.0 2 5 (1 issue needs help) 1 Updated Sep 3, 2024
  • fraposa_pgsc Public Forked from daviddaiweizhang/fraposa

    Tools to perform ancestry projection to a reference dataset within the calculator pipeline (pgsc_calc)

    Python 4 3 5 0 Updated Aug 8, 2024
  • pgscatalog_utils Public archive

    (superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files

    Python 5 Apache-2.0 3 8 0 Updated Jun 25, 2024
  • pgs_metadata_exports Public

    Package to export PGS Catalog metadata

    Python 0 Apache-2.0 1 0 0 Updated Nov 16, 2023
  • pgs_variants_coords Public

    Repository to fetch and store the variant locations from Polygenic Score files, using their rsIDs

    Python 0 Apache-2.0 1 0 1 Updated Nov 1, 2023
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