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@SlavovLab

Slavov Laboratory

We study post-transcriptional regulation at single-cell resolution using https://proteomics.single-cell.net Videos: https://youtube.slavovlab.net

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  1. DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    R 25 10

  2. DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 15 4

  3. HIquant Public

    Forked from nslavov/HIquant

    HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data

    Python 2 1

  4. tissue-ptr Public

    Forked from afranks86/tissue-ptr

    Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)

    R 3

Repositories

Showing 10 of 28 repositories
  • decode Public

    Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding

    Jupyter Notebook 0 0 0 0 Updated Mar 17, 2025
  • DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    R 25 MIT 10 5 12 Updated Mar 17, 2025
  • plexDIA Public

    Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.

    R 11 2 0 0 Updated Mar 17, 2025
  • DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 15 MIT 4 4 4 Updated Mar 17, 2025
  • QuantQC Public

    QuantQC is a package for quality control (QC) of single-cell proteomics data. It is optimized to work with nPOP, a method for massively parallel sample preparation on glass slides.

    HTML 3 1 2 0 Updated Mar 11, 2025
  • Protein-Clearance Public

    Analysis from Leduc and Slavov (2025): Protein degradation and growth dependent dilution substantially shape mammalian proteomes

    R 0 0 0 0 Updated Feb 18, 2025
  • CellPermeability Public

    Cell Permeability analysis

    R 0 0 0 0 Updated Dec 18, 2024
  • pSCoPE Public

    Prioritized Mass Spectrometry Proteomics. Prioritized Single-Cell ProtEomics by Mass Spectrometry code associated with the pSCoPE manuscript.

    R 4 MIT 1 0 0 Updated Dec 8, 2024
  • BayesPG Public

    Systematic inference of post transcriptional regulation using single cell protein and mRNA data

    R 0 MIT 1 0 0 Updated Oct 22, 2024
  • early-stage-embryos Public

    Here you will find scripts and related files that are behind analyses presented in "Proteome asymmetry in mouse & human embryos before fate specification"".

    R 0 MIT 0 0 0 Updated Sep 10, 2024
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