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@SwissOpenEM

OpenEM

The Swiss Open Electron Microscopy Data Network

Summary

The OpenEM Data Network is a consortium of Swiss electron microscopy facilities working together to:

  • Improve Open Research Data (ORD) practices in the Swiss EM community
  • Provide an open and FAIR repository for Swiss EM data not hosted elsewhere
  • Standardize EM metadata & automate collection at Swiss EM facilities
  • Follow a consistent data lifecycle when collecting data at different facilities
  • Streamline publication of EM data into open repositories like EMPIAR, EMDB, and the PDB

OpenEM will target both researchers producing EM data and consumers of open data for additional science. Data producers benefit from more streamlined data collection, standardized facilities, easier deposition for publication, and adherence to data management policies. The wider availability of open EM data brings numerous benefits, including reproducing results, applying new techniques to old data, training AI & other new methods, and mining data for new insights.

Partners & Collaborations

collaborations

Funding

OpenEM is a Swiss Open Research Data Grants (CHORD) project funded by ETH and swissuniversities.

Pinned Loading

  1. MS_Metadata_reader Public

    A collection of Python scripts that extract metadata from EM data for Materials Science.

    Python

  2. ScopeMArchiver Public

    Python

  3. LS_Metadata_reader Public

    Roff

  4. globus Public

    Library for requesting globus transfers

    Go

  5. Ingestor Public

    OpenEM Data Network Ingestor service and app

    Go 1

Repositories

Showing 10 of 16 repositories
  • Ingestor Public

    OpenEM Data Network Ingestor service and app

    Go 0 1 26 7 Updated Apr 28, 2025
  • globus-transfer-service Public

    This is a service that allows for requesting Globus transfers using Scicat tokens

    Go 0 BSD-3-Clause 0 0 0 Updated Apr 25, 2025
  • Python 0 0 53 0 Updated Apr 25, 2025
  • scicat-frontend Public Forked from SciCatProject/frontend

    SciCat open data catalogue web client

    TypeScript 0 BSD-3-Clause 33 0 0 Updated Apr 25, 2025
  • Roff 0 BSD-3-Clause 0 6 1 Updated Apr 24, 2025
  • openem-deployment Public

    Deployment of the OpenEM Ingestor stack with Docker compose

    0 BSD-3-Clause 0 0 0 Updated Apr 23, 2025
  • Depositor Public

    An interface to direct files and metadata from SciCat to OneDep

    Go 0 0 8 0 Updated Apr 22, 2025
  • globusconnectpersonal Public Forked from willGuimont/docker-globus

    Run Globus Connect Personal in a Docker container.

    Shell 0 MIT 1 0 0 Updated Apr 16, 2025
  • scicat-backend-next Public Forked from SciCatProject/scicat-backend-next

    SciCat Data Catalogue Backend

    JavaScript 0 BSD-3-Clause 29 0 1 Updated Apr 15, 2025
  • swissopenem.github.io Public

    Project website

    HTML 0 2 2 0 Updated Apr 15, 2025

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