Language agnostic RESTful data access to Ensembl data over HTTP

A centralized location for storing curated data from cBioPortal

Workshop materials for cBioPortal Webinar 5: API & R Client

A framework for serving and evaluating LLM routers - save LLM costs without compromising quality

Open Source, Language Agnostic Mutation Testing

Build, Improve Performance, and Productionize your LLM Application with an Integrated Framework

The modern replacement for Jupyter Notebooks

High-Resolution Image Synthesis with Latent Diffusion Models

A latent text-to-image diffusion model

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

AdalFlow: The library to build & auto-optimize LLM applications.

Open source code for AlphaFold 2.

A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

A cookiecutter template for Snakemake workflows

A Snakemake executor plugin for submitting jobs to a LSF cluster

AI-powered Jupyter Notebook — use local AI to generate and edit code cells, automatically fix errors, and chat with your data

Vision utilities for web interaction agents 👀

The Open Source Memory Layer For Autonomous Agents

SWE-agent takes a GitHub issue and tries to automatically fix it, using GPT-4, or your LM of choice. It can also be employed for offensive cybersecurity or competitive coding challenges. [NeurIPS 2…

Build applications that make decisions (chatbots, agents, simulations, etc...). Monitor, trace, persist, and execute on your own infrastructure.

Open source AI coding agent. Designed for large projects and real world tasks.

Improved file parsing for LLM’s

Next-token prediction in JavaScript — build fast language and diffusion models.

The Human Microbiome Project

The code and distributable for designing minimal microbial communities with specified metabolic functions.

Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s4…

Code for generation of Minimal Microbiomes using a constraint-based approach

Fine-tune LLM agents with online reinforcement learning

RWKV (pronounced RwaKuv) is an RNN with great LLM performance, which can also be directly trained like a GPT transformer (parallelizable). We are at RWKV-7 "Goose". So it's combining the best of RN…

P-NET, Biologically informed deep neural network for prostate cancer classification and discovery