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@axondeepseg

AxonDeepSeg

Segmentation software for microscopy data of nerve fibers based on deep learning.

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  1. axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    Python 119 32

Repositories

Showing 10 of 29 repositories
  • axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    Python 119 MIT 32 38 5 Updated Mar 28, 2025
  • axon-detection Public

    Exploration of object detection applied to the AxonDeepSeg project

    Jupyter Notebook 1 1 8 1 Updated Mar 26, 2025
  • model_seg_unmyelinated_tem Public

    Model for unmyelinated axon segmentation in TEM images, based on nnUNet

    Python 1 MIT 0 0 0 Updated Mar 18, 2025
  • data-testing Public

    Images and files used for software testing (unit and integration tests).

    0 MIT 0 0 0 Updated Feb 19, 2025
  • model-seg-human-brain-cars Public

    Axon and myelin segmentation model in histology images to quantify myelination in the human brain. Training data was acquired in the uncinate fasciculus using CARS microscopy.

    Python 0 MIT 0 0 0 Updated Feb 3, 2025
  • doc-figures Public

    Repository that contains most figures for axondeepseg documentation.

    0 MIT 0 0 0 Updated Dec 20, 2024
  • seg_ci Public
    Shell 0 0 0 0 Updated Oct 11, 2024
  • nn-axondeepseg Public

    1-class and 2-class segmentation of axon/myelin using nnunetv2

    Python 1 0 5 0 Updated Sep 26, 2024
  • data_ci Public
    0 0 0 0 Updated Sep 20, 2024
  • AxonDeepSynth Public Forked from icon-lab/SynDiff

    AxonDeepSynth is a framework leveraging the SynDiff model for unsupervised image translation, designed to enhance segmentation model performance across different imaging modalities in out-of-distribution (OOD) scenarios. Link to the paper is: https://www.arxiv.org/abs/2412.02858

    Python 1 38 0 1 Updated Jun 24, 2024
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