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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 68 26

  2. med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 46 9

  3. AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

  4. readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader Public

    Python 1

  6. handbook Public

    Lab Handbook For BHKLab

    4

Repositories

Showing 10 of 192 repositories
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 46 MIT 9 18 5 Updated Apr 22, 2025
  • handbook Public

    Lab Handbook For BHKLab

    4 0 38 (1 issue needs help) 5 Updated Apr 22, 2025
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5 MIT 0 25 (1 issue needs help) 2 Updated Apr 22, 2025
  • med-image_test-data Public
    Python 2 0 0 0 Updated Apr 21, 2025
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    JavaScript 5 Apache-2.0 2 16 8 Updated Apr 17, 2025
  • Lung-Lesion-Treatment-Response-Prediction Public

    Code + Data for Lung Lesion Treatment Response Prediction

    Python 0 MIT 0 0 0 Updated Apr 11, 2025
  • MIRV Public
    Python 0 MIT 0 0 0 Updated Apr 7, 2025
  • PMATCH-web Public
    JavaScript 0 0 0 0 Updated Apr 7, 2025
  • ispy-readii Public

    Running READII on the I-SPY cohort for radiogenomic analysis.

    Python 0 MIT 1 0 0 Updated Apr 5, 2025
  • PredictioR Public
    HTML 0 MIT 0 0 0 Updated Apr 2, 2025
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