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@biocore

biocore

Collaboratively developed bioinformatics software.

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  1. gneiss Public

    compositional data analysis toolbox

    Jupyter Notebook 60 27

Repositories

Showing 10 of 90 repositories
  • micov Public

    Aggregate genome coverage

    Python 4 5 8 0 Updated Mar 21, 2025
  • qurro Public

    Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

    JavaScript 33 BSD-3-Clause 10 125 (4 issues need help) 0 Updated Mar 13, 2025
  • unifrac-binaries Public
    C++ 2 BSD-3-Clause 9 3 0 Updated Mar 11, 2025
  • metagenomics_pooling_notebook Public

    Jupyter notebooks to assist with sample processing

    Python 8 MIT 16 58 (2 issues need help) 0 Updated Mar 10, 2025
  • deblur Public

    Deblur is a greedy deconvolution algorithm based on known read error profiles.

    Python 93 BSD-3-Clause 40 14 12 Updated Mar 8, 2025
  • mg-scripts Public

    Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

    Python 1 BSD-3-Clause 5 19 1 Updated Mar 6, 2025
  • microsetta-private-api Public

    A private microservice to support The Microsetta Initiative

    Python 6 BSD-3-Clause 19 63 2 Updated Mar 3, 2025
  • microsetta-interface Public

    The Microsetta participant facing user interface

    Jinja 1 BSD-3-Clause 17 44 4 Updated Feb 26, 2025
  • microsetta-admin Public
    Python 0 BSD-3-Clause 10 16 4 Updated Feb 15, 2025
  • calour Public

    exploratory and interactive microbiome analyses based on heatmaps

    Python 27 BSD-3-Clause 22 62 5 Updated Jan 27, 2025
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