Skip to content
@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

Pinned Loading

  1. nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 88 19

  2. blotter Public

    bedford lab research

    HTML 67 94

  3. global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 22

  4. baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 106 repositories
  • esm-selection Public
    Python 0 0 0 0 Updated Apr 18, 2025
  • egg-adaptation Public

    Adaptation of influenza virus to chicken eggs

    Jupyter Notebook 0 0 0 0 Updated Apr 15, 2025
  • blotter Public

    bedford lab research

    HTML 67 94 2 0 Updated Apr 14, 2025
  • phylogeo-signal Public

    Ability to characterise transmission between population groups from sequence data

    R 0 MIT 0 0 0 Updated Apr 8, 2025
  • fitness-flux Public

    Fitness dynamics of SARS-CoV-2 and seasonal influenza H3N2

    Mathematica 1 1 0 1 Updated Apr 1, 2025
  • evofr Public

    Tools for evolutionary forecasting

    Jupyter Notebook 11 AGPL-3.0 1 8 0 Updated Apr 1, 2025
  • mpox-la Public
    Jupyter Notebook 0 0 0 0 Updated Mar 14, 2025
  • adaptive-evolution Public

    An atlas of continuous adaptive evolution in endemic human viruses

    Jupyter Notebook 4 0 0 0 Updated Feb 27, 2025
  • phylo-kernel-public Public

    Code and data for: "Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences".

    R 1 MIT 2 1 1 Updated Feb 7, 2025
  • relative-fitness-mechanisms Public

    Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth

    Jupyter Notebook 3 0 0 0 Updated Jan 27, 2025

Top languages

Loading…

Most used topics

Loading…