Merge pull request #556 from broadinstitute/dp-bump-core

bump upstream docker images

Merge pull request #511 from broadinstitute/dp-scaffold

more scaffolding updates

Merge pull request #483 from broadinstitute/subsampler-dp

Subsampler and augur workflow

Merge pull request #454 from broadinstitute/dp-reports

samtools ampliconstats needs bed in certain order

Merge pull request #442 from broadinstitute/ct-beast_gpu_new_defaults

set default GPU to K80->P4 in BEAST task; parameterize beagle_order

Merge pull request #434 from broadinstitute/pangolin

bump pangolin to 4.1.2-1.14 and nextclade to 2.5.0

Merge pull request #431 from broadinstitute/dp-cdc

CDC SC2 viral pipeline updates

Merge pull request #426 from broadinstitute/dp-cdc

lofreq task portability, misc other edits

Merge pull request #425 from broadinstitute/pangolin

update pangolin to pdata 1.9

Merge pull request #421 from broadinstitute/pangolin

bump pangolin docker