Skip to content
@calico

Calico

Popular repositories Loading

  1. basenji basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 428 126

  2. borzoi borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 134 15

  3. scBasset scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 97 13

  4. solo solo Public

    software to detect doublets

    Python 90 13

  5. scnym scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 74 13

  6. baskerville baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 37 9

Repositories

Showing 10 of 46 repositories
  • bidac_induced_protein_degradation_analysis Public

    This repository contains accompanying analysis code for the paper "Morphological and genetic screens reveal mechanisms of BiDAC-induced plasma membrane protein degradation".

    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 29, 2025
  • basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 428 Apache-2.0 126 76 4 Updated Mar 29, 2025
  • borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 134 Apache-2.0 15 3 2 Updated Mar 27, 2025
  • baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 37 Apache-2.0 9 1 3 Updated Mar 24, 2025
  • metstats Public

    Library for standardized analysis and visualization of metabolomics data

    R 2 MIT 1 0 0 Updated Mar 18, 2025
  • CalicoLipidLibrary Public

    In silico Lipid fragmentation patterns

    Python 0 MIT 0 3 1 Updated Mar 13, 2025
  • do_bwd Public

    Python implementation of extracting body weight dynamics in diversity outbred mice using ARHMM.

    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 25, 2025
  • westminster Public

    Benchmarking baskerville models for regulatory sequence activity prediction

    Python 1 Apache-2.0 1 0 3 Updated Feb 5, 2025
  • scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 97 Apache-2.0 13 4 0 Updated Jan 17, 2025
  • scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 74 Apache-2.0 13 7 5 Updated Dec 28, 2024

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…