A statically typed programming language for scientific computations with first class support for physical dimensions and units

Deep probabilistic analysis of single-cell and spatial omics data

Blazing-Fast Bioinformatic Operations on Python DataFrames

Fast Open-Source Search & Clustering engine × for Vectors & 🔜 Strings × in C++, C, Python, JavaScript, Rust, Java, Objective-C, Swift, C#, GoLang, and Wolfram 🔍

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. All in a modern, AI-native editor.

An extremely fast Python package and project manager, written in Rust.

Documentation and code for Hack the MontyHome device for extended applications.

Easily and securely send things from one computer to another 🐊 📦

Buckaroo - the data wrangling assistant for pandas. Quickly explore dataframes, and run pandas commands via a GUI. Works inside the jupyter notebook.

OpenMetadata is a unified metadata platform for data discovery, data observability, and data governance powered by a central metadata repository, in-depth column level lineage, and seamless team co…

rga: ripgrep, but also search in PDFs, E-Books, Office documents, zip, tar.gz, etc.

CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes

An educational machine learning library.

A Clojure spreadsheet and more!

Embed Neovim in Chrome, Firefox & others.

🏆 A ranked list of awesome Jupyter Notebook, Hub and Lab projects (extensions, kernels, tools). Updated weekly.

Fast Datagrid widget for the Jupyter Notebook and JupyterLab

Install and Run Python Applications in Isolated Environments

All-in-one LLM CLI tool featuring Shell Assistant, Chat-REPL, RAG, AI Tools & Agents, with access to OpenAI, Claude, Gemini, Ollama, Groq, and more.

Biological sequence analysis for the modern age.

Bayesian Optimization and Design of Experiments

Multi-dimensional, trans-omics metabolic maps.

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

🎨 Diagram as Code for prototyping cloud system architectures

Python package to atom map, correct and suggest enzymatic reactions

Integrating knowledge graphs (KG) with large language models (LLM)

Evals is a framework for evaluating LLMs and LLM systems, and an open-source registry of benchmarks.

Interactive graph visualizations with Python and HTML/CSS/JS.