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@choderalab

Chodera lab // Memorial Sloan Kettering Cancer Center

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  1. pymbar Public

    Python implementation of the multistate Bennett acceptance ratio (MBAR)

    Python 247 94

  2. software-development Public

    A primer on software development best practices for computational chemistry

    263 79

  3. openmmtools Public

    A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

    Python 264 83

  4. modelforge Public

    Infrastructure to implement and train NNPs

    Python 13 5

  5. espaloma Public

    Extensible Surrogate Potential of Ab initio Learned and Optimized by Message-passing Algorithm 🍹https://arxiv.org/abs/2010.01196

    Python 229 27

  6. mtenn Public

    Modular Training and Evaluation of Neural Networks

    Python 6 1

Repositories

Showing 10 of 277 repositories
  • mtenn Public

    Modular Training and Evaluation of Neural Networks

    Python 6 MIT 1 5 4 Updated Mar 24, 2025
  • pymbar Public

    Python implementation of the multistate Bennett acceptance ratio (MBAR)

    Python 247 MIT 94 118 11 Updated Mar 21, 2025
  • missense-kinase-toolkit Public

    A package to facilitate structure- and sequence-based ML for clinically relevant missense human kinase property prediction

    Python 1 MIT 0 0 1 Updated Mar 21, 2025
  • asapdiscovery-sars-retrospective Public

    Repository to store the code used for a paper exploring methods for SARS-2 Mpro Docking.

    Jupyter Notebook 0 CC0-1.0 0 1 0 Updated Mar 19, 2025
  • harbor Public

    A home for docking evaluation and assessment

    Python 2 MIT 0 1 2 Updated Mar 19, 2025
  • fragment-fold Public

    The goal of this repository is to house the scripts and data for taking a fragment screen from the Diamond Light Source and generating a modeled fragment screen for a set of related proteins

    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 14, 2025
  • modelforge Public

    Infrastructure to implement and train NNPs

    Python 13 MIT 5 16 7 Updated Mar 14, 2025
  • broad-spectrum-asap-paper Public

    Scripts and input files for structure-based prediction of affinity across the coronavirus family.

    Jupyter Notebook 0 CC0-1.0 0 0 0 Updated Mar 11, 2025
  • asapdiscovery Public Forked from asapdiscovery/asapdiscovery

    Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium

    Python 0 MIT 2 0 0 Updated Mar 10, 2025
  • Python 0 MIT 0 0 5 Updated Mar 7, 2025