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@dhslab

Code and Software from David Spencer's lab

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  1. nf-core-wgsnano nf-core-wgsnano Public

    Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

    Nextflow 5 4

  2. nf-core-hic nf-core-hic Public

    Pipeline for Hi-C data analysis

    Nextflow 2 1

  3. dhslab-docker-images dhslab-docker-images Public

    Docker images for the Spencer lab

    Dockerfile 1 1

  4. tagbam tagbam Public

    C program to add a tag to reads in a bam file from amplicon sequencing with an ID for each amplicon.

    C 1

  5. dhslab-website dhslab-website Public

    Forked from mpa139/allanlab

    David Spencer Lab website

    SCSS

  6. wdlworkflows wdlworkflows Public

    Spencer lab WDL workflows for genomic analysis

    WDL 1

Repositories

Showing 10 of 19 repositories
  • methfast Public

    Simple c program for manipulating bed-like methylation files

    C 0 MIT 0 0 0 Updated Mar 25, 2025
  • nf-core-scge Public

    Nextflow implementation of scge workflow

    Python 0 MIT 0 0 0 Updated Mar 20, 2025
  • dragenflow Public
    Nextflow 0 MIT 2 0 0 Updated Mar 20, 2025
  • cutandrun Public Forked from nf-core/cutandrun

    Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

    Nextflow 0 MIT 52 0 0 Updated Mar 4, 2025
  • dhslab-docker-images Public

    Docker images for the Spencer lab

    Dockerfile 1 MIT 1 1 0 Updated Feb 22, 2025
  • nf-chromhmm Public
    Nextflow 0 MIT 0 0 0 Updated Feb 21, 2025
  • nf-core-wgsnano Public

    Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

    Nextflow 5 MIT 4 0 0 Updated Dec 16, 2024
  • cle-soma Public

    CLE SOMA workflow

    WDL 0 2 0 0 Updated Dec 11, 2024
  • dhsrmethtools Public

    R functions for methylation analysis

    R 0 0 0 0 Updated Oct 17, 2024
  • nf-core-rnanano Public Forked from dhslab/nf-core-wgsnano

    Nextflow pipeline for analysis of Nanopore RNA sequencing

    Nextflow 0 MIT 4 0 0 Updated Oct 7, 2024
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