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1. SARS-CoV-2-mutation-analysis SARS-CoV-2-mutation-analysis Public

   Analysis code for "A circulating SARS-CoV-2 variant maintains virulence while evading immunity"

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2. consensus-code consensus-code Public

   A respository for code used to call viral consensus sequences

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3. OIE-analysis OIE-analysis Public

   Code for handling OIE record data

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4. discrete-two-host-evolution discrete-two-host-evolution Public

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5. bumblebee-virus-cophylo bumblebee-virus-cophylo Public

   The code for the analysis perfomed in "Host evolutionary history predicts virus prevalence across bumblebee species"

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6. bumble_epi_diversity bumble_epi_diversity Public

   Code and infection data for "Predictors of virus prevalence and diversity across a wild bumblebee community"

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