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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 140 47

  2. OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 50 10

  3. FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 44 22

  4. absplice Public

    Python 38 4

  5. scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 19 2

Repositories

Showing 10 of 53 repositories
  • scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 19 MIT 2 0 2 Updated Mar 31, 2025
  • PROTRIDER Public
    Python 2 0 0 0 Updated Mar 24, 2025
  • scooby_reproducibility Public
    Jupyter Notebook 4 MIT 0 0 0 Updated Mar 18, 2025
  • funcRVP Public

    Bayesian genotype to phenotype model leveraging gene embeddings

    Jupyter Notebook 1 MIT 0 0 0 Updated Mar 17, 2025
  • dependencies_DNALM Public

    Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements

    Jupyter Notebook 11 MIT 1 3 0 Updated Mar 13, 2025
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 140 MIT 47 39 4 Updated Mar 7, 2025
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 50 MIT 10 15 1 Updated Mar 5, 2025
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 44 MIT 22 25 0 Updated Mar 4, 2025
  • drop_demo_data Public
    0 1 0 0 Updated Mar 2, 2025
  • Watershed Public Forked from BennyStrobes/Watershed

    Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq

    Jupyter Notebook 0 12 0 0 Updated Feb 26, 2025
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