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@gear-genomics

GEAR

Genome Analysis Server

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  1. tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    C++ 107 21

  2. dicey Public

    In-silico PCR, primer design and padlock design for in-situ sequencing

    C++ 50 4

  3. indigo Public

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    JavaScript 32 8

  4. wily-dna-editor Public

    The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.

    JavaScript 14 1

  5. silica Public

    In-silico PCR amplification on complete genomes

    JavaScript 9

  6. ancient Public

    Ancestry inference with convolutional neural networks

    Vue 9 2

Repositories

Showing 10 of 25 repositories
  • ancient Public

    Ancestry inference with convolutional neural networks

    Vue 9 GPL-3.0 2 0 2 Updated Mar 21, 2025
  • apps-page Public

    GEAR home page

    Vue 2 0 0 0 Updated Mar 21, 2025
  • tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    C++ 107 BSD-3-Clause 21 10 1 Updated Mar 11, 2025
  • saint Public

    [WIP] saint (similarity hunter): Rapid DNA similarity search against entire genomes.

    JavaScript 4 1 0 0 Updated Feb 13, 2025
  • padlock Public

    Design padlock probes for in-situ sequencing

    HTML 1 GPL-3.0 0 0 0 Updated Nov 18, 2024
  • pearl Public

    Patching references via trace assemblies

    JavaScript 2 GPL-3.0 2 5 1 Updated Oct 31, 2024
  • halo Public

    haplotype processor

    C++ 3 GPL-3.0 1 0 0 Updated Oct 31, 2024
  • indigo Public

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    JavaScript 32 GPL-3.0 8 2 0 Updated Oct 31, 2024
  • sage Public

    Sanger Trace Alignment

    JavaScript 4 GPL-3.0 0 0 0 Updated Oct 31, 2024
  • teal Public

    Sanger Trace Viewer

    JavaScript 8 GPL-3.0 2 1 0 Updated Oct 31, 2024

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