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@hallamlab

Hallam Lab

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  1. metapathways2 Public

    MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds

    Python 33 14

  2. TreeSAPP Public

    A Python package for gene-centric taxonomic and functional classification using phylogenetic placement

    Python 26 4

  3. FragGeneScanPlus Public

    Scalable high-throughput short-read open reading frame prediction

    C 13 11

  4. HivePanelExplorer Public

    Forked from sperez8/HivePanelExplorer

    An interactive and explorative visualization tool in D3 based on hive plots built for complex networks.

    Python 9 3

  5. FAST Public

    FAST Aligner

    C++ 6 1

  6. SABer Public

    SAG Anchored Binner

    Python 3 2

Repositories

Showing 10 of 45 repositories
  • Metasmith Public
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Mar 21, 2025
  • lighting_system_design_2024 Public

    Git repository containing the code and associated high-throughput screening data published in the article "An automated high-throughput lighting-system for screening photosynthetic microorganisms in plate-based formats"

    Python 0 0 0 0 Updated Feb 26, 2025
  • NESAP_marine_heatwaves Public

    This is the code repository for our manuscript highlighting the effects of marine heatwaves on food webs and particle export in the Northeast Subarctic Pacific Ocean.

    RMarkdown 0 1 0 0 Updated Nov 17, 2024
  • TreeSAPP Public

    A Python package for gene-centric taxonomic and functional classification using phylogenetic placement

    Python 26 GPL-3.0 4 18 3 Updated Sep 3, 2024
  • SABer Public

    SAG Anchored Binner

    Python 3 GPL-3.0 2 6 1 Updated Sep 3, 2024
  • samsum Public

    A light-weight python package for summarizing sequence coverage from SAM and BAM files

    Python 7 GPL-3.0 3 8 1 Updated Sep 3, 2024
  • FabFos Public

    A python-driven fosmid processing pipeline

    Python 1 GPL-3.0 3 5 1 Updated Jul 30, 2024
  • LCAStar Public

    Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree

    HTML 14 GPL-3.0 3 0 0 Updated May 29, 2024
  • python_starter_template Public Forked from Tony-xy-Liu/python_starter_template
    Python 0 GPL-3.0 1 0 0 Updated Oct 17, 2023
  • Fosmid-walk Public Forked from Tony-xy-Liu/Fosmid-walk
    Python 0 1 0 0 Updated Oct 5, 2023
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