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@harmslab

Harms Lab @ University of Oregon

Software projects created by members of the the Harms lab at the University of Oregon

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  1. pytc Public

    python program for analyzing isothermal titration calorimetry data

    Python 28 10

  2. epistasis Public

    A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    Python 34 11

  3. latticegpm Public

    Python package for building fitness landscapes from protein lattice models

    Python 2 4

  4. pdbtools Public

    A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

    Python 175 66

  5. gpmap Public

    A Python API for managing genotype-phenotype map data

    Python 11 8

  6. latticeproteins Public

    2d protein lattice model simulator in Python

    Python 2 7

Repositories

Showing 10 of 59 repositories
  • dataprob Public

    Library for fitting models using a likelihood framework.

    Python 4 MIT 2 0 1 Updated Sep 18, 2024
  • linkage Public

    package for fitting thermodynamic linkage models to experimental data

    Jupyter Notebook 0 MIT 2 0 1 Updated Sep 17, 2024
  • ellipticbn Public

    tool for measuring ellipticity of cucurbituril macrocycles

    HTML 1 MIT 1 0 0 Updated Jul 16, 2024
  • topiary Public

    Python framework for doing ancestral sequence reconstruction

    Python 38 MIT 6 11 1 Updated Jul 8, 2024
  • setup_md Public

    Files and scripts used to set up MD simulations in the Harms Lab

    Python 0 MIT 1 0 0 Updated May 14, 2024
  • eee Public

    ensemble epistasis engine

    Python 0 MIT 2 0 0 Updated Nov 16, 2023
  • gpseer Public

    A tool to predict missing data in sparsely sampled genotype-phenotype maps

    Python 6 3 1 0 Updated Aug 18, 2023
  • gpmap Public

    A Python API for managing genotype-phenotype map data

    Python 11 8 1 3 Updated Aug 18, 2023
  • epistasis Public

    A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    Python 34 Unlicense 11 7 0 Updated Aug 18, 2023
  • website Public

    Website for the lab

    HTML 0 MIT 2 0 0 Updated Jan 16, 2023