Nextflow training material

A library of free open source icons for science illustrations in biology and chemistry

🍊 📊 💡 Orange: Interactive data analysis

Detect iSNV and construct whole viral genomes from metagenomic samples

Base for the Viral Genomics and Bioinformatics Repository

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

SPAdes Genome Assembler

ATLAS - Three commands to start analyzing your metagenome data

Infectious Disease Sequencing Platform

A containerized bioinformatics pipeline for viral metagenomic data analysis

A DSL for data-driven computational pipelines

an interactive viewer for populations of bacterial genomes linked by a phylogeny

Rapid large-scale prokaryote pan genome analysis

Nextstrain community build 'Molecular epidemiology of Chikungunya virus'

Chat with your data - AI data analysis and visualization on CSV, Postgres, MySQL, Snowflake, SQLite...

Nextflow workflow template repository

Python tool for converting files and office documents to Markdown.

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

AWS for Bioinformatics Researchers

GCP for Bioinformatics Researchers

A plugin that will automatically download PDFs of zotero items from sci-hub

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…

A curated list of awesome Zotero resources

This repository offers a comprehensive collection of tutorials and implementations for Prompt Engineering techniques, ranging from fundamental concepts to advanced strategies. It serves as an essen…

This is my personal knowledge-base. Here you'll find code-snippets, technical documentation, and command reference for various tools, and technologies.

A reference-based viral consensus genome assembly pipeline