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@kellylab

Kelly lab

Account for Libusha Kelly's lab, Albert Einstein College of Medicine

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  1. viral-protein-function-plm viral-protein-function-plm Public

    Viral protein family functional prediction using protein language models

    PureBasic 18 1

  2. Fireworks Fireworks Public

    PyTorch with DataFrames

    Python 14 3

  3. Metagenomic-Disease-Classification-With-Deep-Learning Metagenomic-Disease-Classification-With-Deep-Learning Public

    This repository accompanies the paper "Multiclass Disease Classification from Microbial Whole-CommunityMetagenomes using Graph Convolutional Neural Networks."

    Python 9 7

  4. microbeFDT-neo4j microbeFDT-neo4j Public

    microbeFDT-neo4j

    4 3

  5. microbial-landscapes microbial-landscapes Public

    Code and data for 'Inferring the quasipotential landscape of microbial ecosystems with topological data analysis'

    R 4 1

  6. viral-protein-function-annotation-with-protein-language-model viral-protein-function-annotation-with-protein-language-model Public

    Accompanying jupyter notebooks and data for figure generation for published manuscript

    Jupyter Notebook 3

Repositories

Showing 10 of 21 repositories
  • 0 0 0 0 Updated Mar 22, 2025
  • sequence_breadth_tools Public

    Extracting and analyzing sequence breadth from Anvi'o databases

    Python 0 GPL-3.0 0 0 0 Updated Nov 21, 2024
  • plm-model-comparison Public

    Comparing novel Protein Language Models

    Jupyter Notebook 0 1 0 0 Updated Sep 15, 2024
  • 0 GPL-3.0 0 0 0 Updated Jun 10, 2024
  • viral-protein-function-plm Public

    Viral protein family functional prediction using protein language models

    PureBasic 18 GPL-3.0 1 2 0 Updated May 29, 2024
  • SARS-CoV-2-surveillence Public

    Scripts and files related to the surveillance of SARS-CoV-2 for three years in the Bronx

    Jupyter Notebook 0 0 0 0 Updated Mar 3, 2024
  • viral-protein-function-annotation-with-protein-language-model Public

    Accompanying jupyter notebooks and data for figure generation for published manuscript

    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Nov 26, 2023
  • Fireworks Public

    PyTorch with DataFrames

    Python 14 MIT 3 0 0 Updated May 1, 2023
  • oral-microbes-are-a-signature-of-disease-in-the-gut Public

    Source code accompanying the paper "Oral Microbes are a Signature of Disease in the Gut"

    0 MIT 0 0 0 Updated May 12, 2022
  • CuratedMetagenomicData-Python Public

    Python Interface for Accessing CuratedMetagenomicData

    0 MIT 0 0 0 Updated Mar 10, 2022

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