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75 Open 125 Closed
75 Open 125 Closed
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Issues list

Questions About Running Numbat on Two Samples
#221 opened Mar 20, 2025 by EmanueleCalvi
Plotting pseudobulk profiles after refining subclones in the phylogeny
#220 opened Mar 18, 2025 by tpjones15
1
no genetic map
#219 opened Mar 17, 2025 by tanya-karagiannis
Application on scDNAseq
#218 opened Mar 10, 2025 by EspressoKris
Joint probability calculations
#217 opened Mar 3, 2025 by idkaavan
1
Request: expression only samples
#216 opened Jan 29, 2025 by Thapeachydude
Running pileup_and_phase.R on Parse bam files
#213 opened Dec 17, 2024 by Zgautier
monoallelic vs ballelic deletions
#212 opened Nov 8, 2024 by nbahlis
Analysis for the X chromosomes.
#211 opened Nov 4, 2024 by gsato3105
1
Refining tumor/normal assignment
#209 opened Oct 29, 2024 by nandobonf
5
How to handle bulk_clones_final CNV states when segs_consensus_fix is provided
#208 opened Oct 22, 2024 by teng-gao
Allow different prior probabilities in segs_consensus_fix enhancement New feature or request
#207 opened Oct 22, 2024 by teng-gao
Numbat running for two samples separately but crashes when I merge the two and perform the same analysis again
#203 opened Aug 26, 2024 by quail768
2
Better error handling?!
#202 opened Aug 13, 2024 by stela2502
(hom_rate > 0.4) {: missing value where TRUE/FALSE needed tofix
#200 opened Aug 6, 2024 by stela2502
@teng-gao
3
Error in vectbl_assign(x[[j]], i, recycled_value[[j]]): DLL requires the use of native symbols
#197 opened Jul 19, 2024 by stela2502
6
Comparison to pseudobulk and sanity check of high major copy number documentation Improvements or additions to documentation
#194 opened Jul 1, 2024 by Nikki-Burdett
6
CNV calling from 10X 5 prime GEX data
#193 opened Jun 14, 2024 by cv55
2
Error: 'separate_longer_delim' is not an exported object from 'namespace:tidyr'
#190 opened May 24, 2024 by fahmadimoughari
2
Error because of dplyr version
#189 opened May 15, 2024 by KatharinaSchmid
1
segfault, caught bus error, non-existent physical address
#188 opened May 13, 2024 by ahwanpandey
6
Fail during numbat : object 'seg' not found
#186 opened Apr 21, 2024 by sxf-ux
saving numbat object after changing n_cut=k kvalue
#185 opened Apr 16, 2024 by whitneyt1
Duplicated segments in segs_consensus for NCI-N87 tofix
#184 opened Apr 12, 2024 by teng-gao
run_numbat() error unclear
#181 opened Apr 5, 2024 by cathalgking
5
ProTip! Exclude everything labeled bug with -label:bug.