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  • klayout Public

    Forked from KLayout/klayout

    KLayout Main Sources

    C++ GNU General Public License v3.0 Updated Feb 9, 2025

  • kfr Public

    Forked from kfrlib/kfr

    Fast, modern C++ DSP framework, FFT, Sample Rate Conversion, FIR/IIR/Biquad Filters (SSE, AVX, AVX-512, ARM NEON)

    C++ GNU General Public License v2.0 Updated Nov 10, 2024

  • BaseNet Public

    Forked from liqingwen98/BaseNet

    BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding

    Python MIT License Updated Sep 29, 2024

  • VMwareWorkstation Public

    Forked from 201853910/VMwareWorkstation

    手动上传官网的VMwareWorkstation安装包

    Updated Jun 4, 2024

  • Porechop Public

    Forked from rrwick/Porechop

    adapter trimmer for Oxford Nanopore reads

    C++ GNU General Public License v3.0 Updated May 8, 2024

  • matplotplusplus Public

    Forked from alandefreitas/matplotplusplus

    Matplot++: A C++ Graphics Library for Data Visualization 📊🗾

    C++ MIT License Updated Apr 10, 2024

  • Chiron Public

    Forked from haotianteng/Chiron

    A basecaller for Oxford Nanopore Technologies' sequencers

    Python Other Updated Apr 3, 2024

  • serial_wave_port Public

    Forked from HuaisenTian/serial_wave_port

    基于Qt的串口调试助手，可绘制实时波形

    C++ Updated Mar 17, 2024

  • dorado Public

    Forked from nanoporetech/dorado

    Oxford Nanopore's Basecaller

    C++ Other Updated Feb 6, 2024

  • bonito Public

    Forked from nanoporetech/bonito

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python Other Updated Dec 12, 2023

  • awesome-nanopore Public

    Forked from GoekeLab/awesome-nanopore

    A curated list of awesome nanopore analysis tools.

    MIT License Updated Nov 30, 2023

  • intervaltree Public

    Forked from chaimleib/intervaltree

    A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

    Python Apache License 2.0 Updated Aug 25, 2023

  • pyABF Public

    Forked from swharden/pyABF

    pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

    Jupyter Notebook MIT License Updated Aug 17, 2023

  • pypysam Public

    Forked from nijibabulu/pypysam

    PyPy-compatible htslib routines for SAM/BAM alignment files

    Python Updated Jun 27, 2023

  • 7-Zip-zstd Public

    Forked from mcmilk/7-Zip-zstd

    7-Zip with support for Brotli, Fast-LZMA2, Lizard, LZ4, LZ5 and Zstandard

    C Other Updated Jun 18, 2023

  • Butterworth-filter Public

    Forked from adis300/filter-c

    Elegant Butterworth and Chebyshev filter implemented in C, with float/double precision support. Works well on many platforms. You can also use this package in C++ and bridge to many other languages…

    C MIT License Updated Mar 21, 2023

  • zstd Public

    Forked from facebook/zstd

    Zstandard - Fast real-time compression algorithm

    C Other Updated Feb 10, 2023

  • molecular-cfDNA-fragmentomics Public

    Forked from hellosunking/molecular-cfDNA-fragmentomics

    An et al. Nature Communications 2023

    Perl Updated Jan 19, 2023

  • NA12878 Public

    Forked from nanopore-wgs-consortium/NA12878

    Data and analysis for NA12878 genome on nanopore

    Python Other Updated Nov 22, 2022

  • AutoNanopore Public

    Forked from bellstwohearted/AutoNanopore

    An automated adaptive and robust method to locate translocation events in solid-state nanopore current traces

    Python Updated Nov 17, 2022

  • RLM Public

    Forked from sarahet/RLM

    Read level DNA methylation analysis of bisulfite converted sequencing data

    C++ BSD 3-Clause "New" or "Revised" License Updated Oct 26, 2022

  • RProp-1 Public

    Forked from ntnu-ai-lab/RProp

    Resilient backpropagation algorithm (RProp) optimizer implemented for Keras/TF

    Python Updated Oct 24, 2022

  • wgbs_tools Public

    Forked from nloyfer/wgbs_tools

    tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

    Python Other Updated Oct 20, 2022

  • cragr Public

    Forked from epifluidlab/cragr

    R package for CRAG

    R Other Updated Jul 21, 2022

  • ABF-SDK Public

    Forked from swharden/ABF-SDK

    Resources for working with Axon Binary Format (ABF) Files

    C++ MIT License Updated Jan 29, 2022

  • scrappie Public

    Forked from nanoporetech/scrappie

    Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

    C Mozilla Public License 2.0 Updated Jan 13, 2022

  • AECT Public

    Forked from hanbw0120/AECT

    A deep learning based pipeline for TSS coverage denoising and feature extraction from shallow cell free DNA sequencing

    Python Updated Oct 9, 2021

  • Griffin Public

    Forked from adoebley/Griffin

    A flexible framework for nucleosome profiling of cell-free DNA

    Python Other Updated Sep 20, 2021

  • bwa-meth Public

    Forked from brentp/bwa-meth

    fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome

    PostScript 1 MIT License Updated Sep 16, 2021

  • Msuite2 Public

    Forked from hellosunking/Msuite2

    Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance

    C++ Updated Sep 13, 2021