Markowetz lab @ CRUK Cambridge Institute
- 30 followers
- Cambridge
- http://www.markowetzlab.org
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Repositories
- scDNAseq-workflow Public
calling absolute copy numbers on single cell DNA sequencing data - stagging repo for public release
- CINSignatureQuantification Public
Quantifying copy number signatures from absolute copy number profiles
- scAbsolute Public
Measuring single-cell ploidy and cell cycle status in single-cell DNA sequencing data
- CLAM Public Forked from mahmoodlab/CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
- tissue_segmentation Public
This script takes whole slide images (typically .svs or .ndpi files; either from biospsies or Cytosponge etc) as an input and returns an image file (typically .png file) of the mask of where the tissue is located (black: tissue, white: background).
- geojson_xml Public
A tool to convert geojson files (e.g., used in QuPath) into xml files (e.g., used in ASAP) and vice versa.
- CNsignatures Public
This is data and code from our first paper on copy number signatures (Macintyre et al., Nat Gen, 2018).
