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  1. JaBbA JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 56 26

  2. gGnome gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 39 21

  3. fishHook fishHook Public

    R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

    R 28 9

  4. gGnome.js gGnome.js Public

    JavaScript 26 5

  5. gTrack gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    R 16 12

  6. dryclean dryclean Public

    Irons out wrinkles in noisy coverage data using robust PCA

    R 13 14

Repositories

Showing 10 of 37 repositories
  • gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 39 MIT 21 5 10 Updated Mar 25, 2025
  • nf-gos Public

    End to end cancer genomics pipeline

    Nextflow 1 MIT 2 11 0 Updated Mar 24, 2025
  • gOS Public

    Genomic case report

    JavaScript 0 BSD-3-Clause 0 8 0 Updated Mar 24, 2025
  • skilift Public

    An R interface for loading and modifying PGV datafiles

    R 0 3 4 1 Updated Mar 24, 2025
  • Flow Public

    R-based genomics workflow management

    R 8 6 2 1 Updated Mar 23, 2025
  • JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 56 MIT 26 14 1 Updated Mar 23, 2025
  • ffTrack Public

    GenomicRanges based R class for fast, out-of-core memory access and storage of numeric and character data that is a function of genomic position.

    R 0 MIT 0 1 1 Updated Mar 21, 2025
  • skitools Public

    General purpose mskilab R tools

    R 6 8 0 1 Updated Mar 19, 2025
  • onenesstwoness Public

    Random forest classifier for BRCA1/BRCA2 deletion phenotype classification

    R 0 0 0 0 Updated Mar 13, 2025
  • GxG Public

    Scalable GenomicRanges based class for storing, manipulating, and querying genomic matrices and pairwise features.

    R 7 MIT 7 1 0 Updated Mar 12, 2025

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