Repositories list

• rawls

  Public
  Rawls service for DSDE

  Scala

  •

  BSD 3-Clause "New" or "Revised" License

  •4•26•0•10•Updated Mar 21, 2025Mar 21, 2025

• mitograph

  Public
  Rust

  •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• jump_hub

  Public
  Collection of JUMP documentation and projects for internal and public consumption

  compbioprofiling

  Python

  •

  Creative Commons Zero v1.0 Universal

  •1•3•7•0•Updated Mar 21, 2025Mar 21, 2025

• starrynight

  Public
  Library and tools to process optical pooled screening datasets

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•19•2•Updated Mar 21, 2025Mar 21, 2025

• depmap-portal

  Public
  Code for the DepMap portal at depmap.org

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•7•0•6•Updated Mar 20, 2025Mar 20, 2025

• dig-dug-portal

  Public
  Vue

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•1•0•Updated Mar 20, 2025Mar 20, 2025

• seqr

  Public
  web-based analysis tool for rare disease genomics

  Python

  •

  GNU Affero General Public License v3.0

  •89•185•47•3•Updated Mar 20, 2025Mar 20, 2025

• gnomad-blog

  Public
  Blog for the gnomAD project

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•7•3•Updated Mar 20, 2025Mar 20, 2025

• backstage

  Public
  Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)

  TypeScript

  •0•2•3•7•Updated Mar 20, 2025Mar 20, 2025

• gatk-sv

  Public
  A structural variation pipeline for short-read sequencing

  bioinformaticsgenomicsstructural-variation+ 1structural-variants

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •75•183•79•21•Updated Mar 20, 2025Mar 20, 2025

• seqr-helm

  Public
  Helm charts for the seqr project

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•3•0•0•Updated Mar 20, 2025Mar 20, 2025

• single_cell_portal_core

  Public
  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

  rna-seq-analysissingle-cell-genomicshuman-cell-atlas

  Ruby

  •

  BSD 3-Clause "New" or "Revised" License

  •26•67•0•2•Updated Mar 20, 2025Mar 20, 2025

• dsp-appsec-infrastructure-apps

  Public
  This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.

  application-securityappsecsecurity-scanner+ 10secure-developmentsecurity-automationsecurity-toolsdevsecopssecurity-scanappsecurityappsec-tools+ 3

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•6•0•3•Updated Mar 20, 2025Mar 20, 2025

• scp-ingest-pipeline

  Public
  File Ingest Pipeline for Single Cell Portal

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•5•0•1•Updated Mar 20, 2025Mar 20, 2025

• gatk

  Public
  Official code repository for GATK versions 4 and up

  sciencebioinformaticsgenomics+ 6genomengssequencingdnasparkgatk

  Java

  •

  Other

  •602•1.8k•1.2k•131•Updated Mar 20, 2025Mar 20, 2025

• jati

  Public
  DSL support library for Rust

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

• gnomad-deployments

  Public
  kustomizations for current gnomad project kubernetes deployments

  Makefile

  •1•1•1•3•Updated Mar 20, 2025Mar 20, 2025

• palantir-workflows

  Public
  Utility workflows for the DSP hydro.gen team (formerly palantir)

  WDL

  •

  BSD 3-Clause "New" or "Revised" License

  •8•23•4•3•Updated Mar 20, 2025Mar 20, 2025

• exome-results-browsers

  Public
  Results browsers for case-control studies of psychiatric diseases done at the Broad Institute

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •4•11•9•3•Updated Mar 20, 2025Mar 20, 2025

• seqr-loading-pipelines

  Public
  hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

  Python

  •

  MIT License

  •20•23•21•2•Updated Mar 20, 2025Mar 20, 2025

• grit-benchmark

  Public
  Benchmarking a metric used to evaluate a perturbation strength

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •4•6•7•1•Updated Mar 20, 2025Mar 20, 2025

• workbench-libs

  Public
  Workbench utility libraries

  Scala

  •

  Other

  •4•9•0•4•Updated Mar 20, 2025Mar 20, 2025

• fiss

  Public
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •29•31•47•1•Updated Mar 20, 2025Mar 20, 2025

• juniper

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •5•9•0•7•Updated Mar 20, 2025Mar 20, 2025

• firecloud-orchestration

  Public
  Scala

  •

  BSD 3-Clause "New" or "Revised" License

  •4•31•0•2•Updated Mar 20, 2025Mar 20, 2025

• gnomad-browser

  Public
  Explore gnomAD datasets on the web

  javascriptgenomicsgnomad

  TypeScript

  •

  MIT License

  •48•81•158•14•Updated Mar 20, 2025Mar 20, 2025

• hidive

  Public
  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•5•1•Updated Mar 20, 2025Mar 20, 2025

• warp

  Public
  WDL Analysis Research Pipelines

  WDL

  •

  BSD 3-Clause "New" or "Revised" License

  •102•210•5•15•Updated Mar 20, 2025Mar 20, 2025

• ml4h

  Public
  Python

  •

  Other

  •24•128•30•21•Updated Mar 20, 2025Mar 20, 2025

• depmap_omics

  Public
  What you need to process the Quarterly DepMap-Omics releases from Terra

  data-sciencecancer-genomicscloud-computing+ 1depmap

  HTML

  •22•114•3•2•Updated Mar 20, 2025Mar 20, 2025