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@pepkit

Portable Encapsulated Projects

Standardized sample metadata structure for biological research

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  1. peppy Public

    Project metadata manager for PEPs in Python

    Python 37 12

  2. looper Public

    A job submitter for Portable Encapsulated Projects

    Python 22 7

  3. geofetch Public

    Builds a PEP from SRA or GEO accessions

    Python 48 5

  4. pepr Public

    Project metadata manager for PEPs in R

    R 3 1

  5. pepspec Public

    Documentation for PEP specification and all PEPkit software

    HTML 9 4

  6. pephub Public

    A web API and database for biological sample metadata

    TypeScript 16 2

Repositories

Showing 10 of 43 repositories
  • pephub Public

    A web API and database for biological sample metadata

    TypeScript 16 BSD-2-Clause 2 57 (2 issues need help) 2 Updated Mar 25, 2025
  • pepdbagent Public

    Database for storing sample metadata

    Python 2 BSD-2-Clause 1 8 (1 issue needs help) 0 Updated Mar 24, 2025
  • pepspec Public

    Documentation for PEP specification and all PEPkit software

    HTML 9 4 5 0 Updated Mar 20, 2025
  • geopephub Public

    Automatic uploader of GEO metadata to PEPhub.

    Python 0 BSD-2-Clause 0 4 (1 issue needs help) 0 Updated Mar 17, 2025
  • looper Public

    A job submitter for Portable Encapsulated Projects

    Python 22 BSD-2-Clause 7 12 (1 issue needs help) 1 Updated Mar 5, 2025
  • ubiquerg Public

    Tools for work (erg) everywhere (ubique)

    Python 0 BSD-2-Clause 3 1 0 Updated Mar 5, 2025
  • pipestat Public

    Pipeline results reporting package

    Python 4 BSD-2-Clause 2 12 0 Updated Feb 13, 2025
  • pephubclient Public

    A tool to provide Python and CLI interface and Python API for PEPhub.

    Python 3 BSD-2-Clause 0 7 (2 issues need help) 0 Updated Nov 26, 2024
  • hello_looper Public

    A Hello World! example repository for looper

    Python 0 5 0 0 Updated Oct 2, 2024
  • eido Public

    Validator for PEP objects

    Python 5 BSD-2-Clause 5 4 0 Updated Sep 30, 2024

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