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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 496 243

  2. distributions Public

    Makefile 1 5

  3. q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs Public

    Python 21 58

Repositories

Showing 10 of 77 repositories
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    Python 0 0 2 1 Updated Mar 23, 2025
  • distributions Public
    Makefile 1 BSD-3-Clause 5 4 1 Updated Mar 23, 2025
  • library Public

    A website for sharing QIIME 2 Plugins

    Svelte 0 BSD-3-Clause 1 2 0 Updated Mar 23, 2025
  • q2-mystery-stew Public

    This plugin exists to define integration tests between interfaces and the framework.

    Python 0 BSD-3-Clause 6 0 1 Updated Mar 21, 2025
  • q2-metadata Public
    Python 3 BSD-3-Clause 18 6 1 Updated Mar 21, 2025
  • q2-longitudinal Public

    QIIME 2 plugin for paired sample comparisons

    Python 9 BSD-3-Clause 18 30 (4 issues need help) 2 Updated Mar 21, 2025
  • Python 13 BSD-3-Clause 17 12 1 Updated Mar 21, 2025
  • q2-feature-table Public

    QIIME 2 plugin supporting operations on feature tables.

    Python 2 BSD-3-Clause 39 24 (2 issues need help) 2 Updated Mar 21, 2025
  • q2-emperor Public
    Python 1 BSD-3-Clause 22 4 1 Updated Mar 21, 2025
  • Python 0 BSD-3-Clause 11 6 1 Updated Mar 21, 2025