Spatial alignment of single cell transcriptomic data.

Python methods for computing Differential Velocity

Official code repository for GATK versions 4 and up

🧬 gget enables efficient querying of genomic reference databases

Statistical Analysis of Metagenomic Profiles

Metagenomic classification of long-read sequencing data

DeepMicrobes: taxonomic classification for metagenomics with deep learning

Variational autoencoder for metagenomic binning

Classifier for metagenomic sequences

A complete pipeline for metagenomic analysis

A robust, extensible metagenomics pipeline

🌈 Interactive analysis of metagenomics data

Genomic Pre-trained Network

[DEPRECATED] An R package for Google Genomics API queries.

Lesson on data analysis and visualization in R for genomics

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Jupyter Notebooks on Azure for Genomics Data Analysis

web-based analysis tool for rare disease genomics

Code and examples for JHU Computational Genomics class

Python and C++ code for reading and writing genomics data.

Viral genomics analysis pipelines

A collaboratively written review paper on deep learning, genomics, and precision medicine

10x Genomics Single Cell Analysis

Genomics Workflows on AWS

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Embeddable genomic visualization component based on the Integrative Genomics Viewer

R toolkit for single cell genomics

Large language Models (LLM)