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  1. Bandage Public

    a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

    C++ 606 101

  2. Unicycler Public

    hybrid assembly pipeline for bacterial genomes

    C++ 586 135

  3. Trycycler Public

    A tool for generating consensus long-read assemblies for bacterial genomes

    Python 317 29

  4. Badread Public

    a long read simulator that can imitate many types of read problems

    Python 210 24

  5. Polypolish Public

    a short-read polishing tool for long-read assemblies

    Rust 156 11

  6. Autocycler Public

    A tool for generating consensus long-read assemblies for bacterial genomes

    Rust 113 7