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@saeyslab

Saeys Lab

Data Mining and Modelling for Biomedicine, a VIB - UGent research unit

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  1. nichenetr Public

    NicheNet: predict active ligand-target links between interacting cells

    R 532 123

  2. FlowSOM Public

    Using self-organizing maps for visualization and interpretation of cytometry data

    R 27 8

  3. multinichenetr Public

    MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

    HTML 143 17

  4. PeacoQC Public

    Peak-based selection of high quality cytometry data

    R 16 9

  5. spotless-benchmark Public

    A repository for benchmarking spatial deconvolution and mapping tools

    R 33 4

  6. CytoNorm Public

    R library to normalize cytometry data

    R 36 9

Repositories

Showing 10 of 61 repositories
  • harpy Public

    Single-cell spatial proteomics analysis that makes you happy!

    Python 25 5 12 2 Updated Apr 17, 2025
  • FlowSOM_Python Public

    The complete FlowSOM package known from R, now available in Python!

    Python 19 GPL-3.0 5 3 1 Updated Apr 17, 2025
  • iidx Public

    Interactive and interpretable differential expression modelling in cytometry

    R 0 Apache-2.0 0 0 0 Updated Apr 16, 2025
  • ComputationalCytometry Public

    Workshop computational cytometry

    R 2 0 0 0 Updated Apr 15, 2025
  • Python 26 0 11 1 Updated Apr 14, 2025
  • nichenetr Public

    NicheNet: predict active ligand-target links between interacting cells

    R 532 123 18 2 Updated Apr 10, 2025
  • HTML 0 MIT 0 0 0 Updated Apr 2, 2025
  • CytoNorm Public

    R library to normalize cytometry data

    R 36 9 31 0 Updated Apr 1, 2025
  • FlowSOM Public

    Using self-organizing maps for visualization and interpretation of cytometry data

    R 27 8 5 0 Updated Mar 17, 2025
  • marble-sorter-ui Public

    Interface for the marble sorter

    Python 0 MIT 0 0 0 Updated Mar 7, 2025