R MCP Server

An MCP server that installs other MCP servers for you

Model Context Protocol Servers

Thermodynamic Integration for Turing models and more

Implementations of parallel tempering algorithms to augment samplers with tempering capabilities

cast and annotate metadata, laboratory & clinical data

Inference framework for serological data

Work in progress repository for the evaluation paper associated with the `baselinenowcast` R package

Code to supplement thesis "Bayesian Hierarchical Modelling Frameworks for Correcting Reporting Delays in Disease Surveillance".

odin on the web

Replica Exchange sampling as-a-service

What the Package Does (One Line, Title Case)

A data modelling layer built on top of polars and pydantic

The Julia Programming Language

Static site generation with Pluto, WIP

Compare two statefiles of the same notebook (e.g. after making a PR)

A serological inference package using reversible jump mcmc

State space programming

Slice sampling algorithms in Julia

R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

The repository of the Epidemiologist Julia Handbook

Regression with Interval-Censored Covariates (in R)

Estimating Infection Rates from Serological Data

Stochastic epidemiological branching simulation

Code for the estimation period of the incubation period of MPXV clade Ib

Assessing accuracy of fitness model forecasts

Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth