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Repositories10 (10)

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10 results

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Ensembl/ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

mysql

python

docker

pipeline

sqlite

• Perl
·
• 53
·
• Updated
  on Jan 13

Star

Ensembl/ensembl-compara

The Ensembl Compara Perl API and SQL schema

mysql

api

bioinformatics

database

perl

• Perl
·
• 52
·
• Updated
  4 days ago

Star

Ensembl/treebest

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

reconciliation

ensembl

neighbor-joining

maximum-likelihood

phylogeny

• C
·
• 21
·
• Updated
  on Oct 9, 2019

Star

Ensembl/ensembl-git-tools

A collection of tools which Ensembl uses to work with Git

git

ensembl

• Perl
·
• 9
·
• Updated
  on Sep 9, 2024

Star

Ensembl/trackhub-registry

Public archive

Specifications and implementation of the TrackHub registry

registry

elasticsearch

perl

ensembl

das

• Perl
·
• 7
·
• Updated
  on Feb 2, 2023

Star

Ensembl/ensembl-hive-pbspro

Public archive

'PBS Pro' implementation of Ensembl Hive Meadow interface

docker

perl

ehive

ensembl

pbs-pro

• Perl
·
• 3
·
• Updated
  on Oct 15, 2024

Star

Ensembl/ensembl-taxonomy

API for accessing NCBI taxonomy

api

perl

ensembl

ncbi-taxonomy

• Perl
·
• 1
·
• Updated
  on Feb 11

Star

Ensembl/ensembl-hive-htcondor

Public archive

HTCondor Meadow for Ensembl Hive

docker

perl

htcondor

ehive

ensembl

• Perl
·
• 1
·
• Updated
  on Oct 15, 2024

Star

Ensembl/ensembl-hive-sge

Public archive

SGE Meadow for Ensembl Hive

docker

perl

sge

ehive

ensembl

• Perl
·
• 1
·
• Updated
  on Oct 15, 2024

Star

Ensembl/ensembl-hive-docker-swarm

Public archive

'Docker Swarm' implementation of Ensembl Hive Meadow interface

docker

perl

docker-swarm

ehive

ensembl

• Perl
·
• 1
·
• Updated
  on Oct 15, 2024

Star

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